Two epigenetic regulators interfere with healthy aging

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It has long been assumed that lifespan and health are strongly correlated, but although there has been an overall increase in human life expectancy in recent decades, it is too often accompanied by deterioration of health.

A new study published on February 26 in Nature shows the influence of two epigenetic regulators on aging. Scientists led by Jie Yuan from the Chinese Academy of Sciences in Shanghai have studied the BAZ-2 and SET-6 proteins in Caenorhabditis elegans worms, which are orthologs of the human proteins BAZ2B and EHMT1.

Through genome-wide RNA-interference-based screening of genes that regulate behavioral deterioration in aging C. elegans, the researchers identified 59 genes as potential health modulators during aging. Essentially the proteins expressed by these genes, read and write epigenetic signals.

Among these modulators, they found that a neuronal epigenetic reader, BAZ-2, and a neuronal histone SET-6, accelerate the deterioration of the behavior of C. elegans by reducing the mitochondrial function, and repressing the expression of the encoded mitochondrial proteins. in the cell nucleus.

The researchers found that the levels of the two proteins increase with age in C. elegans and mice, which in turn attenuates the expression of genes involved in mitochondrial function.

BAZ-2 and SET-6 are complementary epigenetic mechanisms. SET-6 is an "epigenetic writer" and BAZ-2 is an "epigenetic reader" which recognizes modified histones and recruits transcriptional regulators.

Histones are proteins located in the nucleus of eukaryotic cells. They are the main protein components of chromosomes. They are closely associated with DNA and allow their compaction, but they also modify the expression of proteins by various epigenetic mechanisms known as the "histone code".

enter image description here Source Wikipedia.

How do BAZ-2 and SET-6 accelerate aging? The researchers found that the two proteins bind together to the promoter regions of more than 2,000 genes, and decrease their expression via methylation of histones. Among these target genes are many mitochondrial genes encoded nuclear. By suppressing the expression of these genes, BAZ-2 and SET-6 reduce oxygen consumption and ATP production, and decrease the critical stress responses that maintain mitochondrial proteostasis. The resulting metabolic slowdown discourages the worms from assimilating their food and they mate less.

This mechanism is conserved in the neurons of cultured mice and human cells. What about the orthologs of these epigenetic proteins in humans? A review of the databases shows that expression by human orthologs of the two proteins mentioned above, BAZ2B and EHMT1, increases with age and is positively correlated with the progression of Alzheimer's disease. Researchers have verified that ablation of BAZ-2 mouse ortholog Baz2b attenuates age-dependent body weight gain and prevents cognitive decline in aging mice.

enter image description here While wild-type mice grew fat with age, animals lacking both copies of the epigenetic reader Baz2b stayed trim, indicating improved mitochondrial function. [Yuan et al., Nature, 2020.]

However, it must be asked whether BAZ-2 and SET-6 would rather mediate age-related physiological adaptation, rather than the agents of aging itself. Indeed their action could reflect a mechanism of adaptation to a progressively more hostile biological environment.

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Significance of the Topic:

The study of sensory processing in autism spectrum disorder (ASD) is crucial due to its impact on an individual's quality of life. Up to 95% of autistic individuals experience sensory processing differences, which can lead to difficulties in social interactions, communication, and daily functioning. Understanding the complex relationship between hyper- and hyporesponsivity to sensory stimuli in ASD can provide valuable insights into the neural mechanisms underlying this condition.

Importance:

The study's findings have significant implications for the diagnosis, management, and treatment of ASD. By acknowledging the co-occurrence of hyper- and hyporesponsivity, clinicians can develop more comprehensive and targeted interventions that address the individual's unique sensory processing needs. This can improve the quality of life for autistic individuals and their families.

Timeliness:

The study's focus on the complex relationship between sensory hyper- and hyporesponsivity in ASD is especially timely. Recent advances in neuroimaging and computational modeling have enabled researchers to better understand the neural mechanisms underlying sensory processing. This study contributes to the growing body of research in this area, providing new insights that can inform the development of effective treatments and interventions.

Relevance:

The study's findings have relevance beyond ASD, as they may also apply to a broader range of neurological, psychiatric, and developmental conditions characterized by sensory processing difficulties. The "Sensory Paradox" framework proposed by the study offers a new perspective on sensory processing, which can be applied to various conditions, including ADHD, anxiety disorders, and intellectual disabilities.

Analysis of the Text:

  1. Background: The study begins by establishing the significance of sensory processing in ASD, highlighting the prevalence and impact of sensory processing differences in autistic individuals.
  2. Methods: The researchers describe their methodology, which involves assessing sensory hyper- and hyporesponsivity in 3-4-year-old children with ASD and typically developing children.
  3. Findings: The study reports a positive correlation between sensory hyper- and hyporesponsivity within and across sensory modalities, which the researchers term the "Sensory Paradox."
  4. Interpretation: The study's authors interpret the findings in the context of previous literature, suggesting that the "Sensory Paradox" provides a new framework for understanding sensory processing in ASD and other neurodevelopmental disorders.
  5. Funding: The study acknowledges the funding agencies that supported the research, highlighting the importance of continued funding for autism research.
  6. Research in Context: The study provides an overview of the existing literature on sensory processing in ASD, highlighting the need for a more comprehensive understanding of this complex phenomenon.
  7. Added Value: The study emphasizes the novel finding of the positive correlation between sensory hyper- and hyporesponsivity, which offers a new perspective on sensory processing.
  8. Implications: The study's authors discuss the implications of their findings for the diagnosis, management, and treatment of ASD, as well as their potential relevance to other neurological, psychiatric, and developmental conditions.

Usefulness for Disease Management or Drug Discovery:

The study's findings have significant implications for the development of effective treatments and interventions for ASD. By understanding the complex relationship between sensory hyper- and hyporesponsivity, clinicians can develop more targeted and comprehensive approaches to addressing sensory processing difficulties. This can improve the quality of life for autistic individuals and their families.

Originality:

The study's finding of the positive correlation between sensory hyper- and hyporesponsivity is a novel contribution to the field. While previous studies have identified both hyper- and hyporesponsivity in ASD, the study's emphasis on the co-occurrence of these two phenomena offers a new perspective on sensory processing.

Comparison with the State of Art:

The study's findings are consistent with previous research on sensory processing in ASD, which has highlighted the complex and variable nature of sensory processing difficulties in this population. However, the study's emphasis on the positive correlation between sensory hyper- and hyporesponsivity offers a new framework for understanding sensory processing in ASD and other neurodevelopmental disorders.

Read the original article on medRxiv

Analysis of the Text: Significance, Importance, Timeliness, and Relevance

The text discusses the relationship between plasma glial fibrillary acidic protein (GFAP), a marker of astrocytic activation, and Alzheimer's disease (Alzheimer's disease) in cognitively unimpaired (CU) older adults. The significance of this topic lies in its potential to provide insights into the early detection and monitoring of Alzheimer's disease, a debilitating neurodegenerative disorder affecting millions worldwide.

Importance:

  1. Early detection and prevention: Identifying prognostic biomarkers like GFAP can facilitate early detection and intervention, potentially slowing or preventing cognitive decline.
  2. Personalized medicine: The observed sex-specific vulnerability highlights the importance of considering individual factors, such as sex, in Alzheimer's disease research and treatment.
  3. Development of targeted therapies: Understanding the relationship between GFAP and Alzheimer's disease can inform the development of novel therapeutic approaches targeting astrocytic activation.

Timeliness:

  1. Advancements in Alzheimer's disease research: The study contributes to the growing field of Alzheimer's disease research, which has seen significant progress in recent years.
  2. Emergence of biomarkers: The identification of plasma GFAP as a prognostic biomarker aligns with the increasing focus on developing reliable biomarkers for Alzheimer's disease.

Relevance:

  1. Clinical implications: The findings have implications for the clinical management of Alzheimer's disease, particularly in the early stages of the disease.
  2. Research applications: The study's results can inform future research on the mechanisms underlying Alzheimer's disease and the development of effective treatments.

Analysis of the Text: Relationship between Items

  1. Plasma GFAP: Elevated plasma GFAP is associated with lower cognitive performance, greater amyloid burden, and faster cognitive decline in CU older adults.
  2. Amyloid burden: Higher amyloid burden is linked to elevated GFAP, suggesting a relationship between astrocytic activation and amyloid accumulation in Alzheimer's disease.
  3. Cognitive decline: Plasma GFAP predicts faster cognitive decline, highlighting its potential as a prognostic biomarker for Alzheimer's disease.
  4. Sex-specific vulnerability: The study reveals stronger associations between GFAP and Alzheimer's disease-related outcomes in females, underscoring the importance of considering sex-specific factors in Alzheimer's disease research.

Usefulness for Disease Management and Drug Discovery:

The study provides valuable insights into the relationship between plasma GFAP and Alzheimer's disease, which can inform the development of novel therapeutic approaches targeting astrocytic activation. Elevated GFAP may serve as a prognostic biomarker for Alzheimer's disease, enabling early detection and intervention. The observed sex-specific vulnerability highlights the need to consider individual factors, such as sex, in Alzheimer's disease research and treatment.

Originality of the Text:

The study provides original information by:

  1. Identifying plasma GFAP as a prognostic biomarker: The study demonstrates the predictive value of plasma GFAP in CU older adults, offering a potential new tool for Alzheimer's disease research and diagnosis.
  2. Highlighting sex-specific vulnerability: The findings emphasize the importance of considering sex-specific factors in Alzheimer's disease research and treatment, which is a relatively unexplored area of study.
  3. Investigating longitudinal associations: The study's longitudinal design allows for a more comprehensive understanding of the relationships between plasma GFAP, cognitive decline, and Alzheimer's disease-related outcomes.

Read the original article on medRxiv

Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disorder with limited therapeutic options. Riluzole remains the only widely available treatment in ALS, yet its benefits are modest and highly variable across patients. Genetic variation in cytochrome P450 2D6 (CYP2D6), a major enzyme in drug metabolism, detoxification of environmental toxins, and biotransformation of endogenous transmitters, has been implicated as a risk factor in neurodegenerative diseases. It has been observed to play a role in the development of both Parkinsons disease and Alzheimers disease, but its role in ALS has not been established.

Using whole-genome sequencing data from more than 6000 individuals in the multinational Project MinE consortium, we examined whether CYP2D6 variants and genotype-inferred metaboliser phenotypes influence ALS risk and survival. We used both multivariable logistic regression and multivariable Cox proportional hazards regression for the analyses, controlling for important clinical covariates.

Reduced CYP2D6 activity, driven by the common loss-of-function CYP2D6*4 and other *-alleles causing either decrease or loss of the enzyme function, was associated with increased risk of ALS. Although CYP2D6 variation had no overall effect on survival, in patients receiving Riluzole we observed a protective association, with poor metabolisers showing the greatest survival advantage compared with normal metabolisers.

These findings suggest that variation in CYP2D6 contributes to ALS susceptibility and can modify treatment response. Incorporating CYP2D6 genetic profiling into ALS clinical trials could reduce pharmacokinetic variability and improve detection of therapeutic effects. More broadly, this work provides a rationale for integrating pharmacogenomics into ALS research and care as a step towards precision medicine in neurodegeneration.

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Analysis of the Text: Significance, Importance, Timeliness, and Relevance

The text discusses the development of a noninvasive biomarker platform for the detection, monitoring, and intervention of neurodegenerative diseases such as Alzheimer's disease (AD), Parkinson's disease (PD), and amyotrophic lateral sclerosis (ALS). This platform utilizes blood-based circulating cell-free DNA (cfDNA) methylation patterns to identify the origin of neuronal or glial cells.

Significance: The development of noninvasive biomarkers for neurodegenerative diseases is crucial for earlier detection and monitoring, allowing for more effective intervention and potentially improved patient outcomes. Current diagnostic methods often rely on invasive procedures or late-stage symptoms, limiting treatment options.

Importance: Neurodegenerative diseases are a significant burden on healthcare systems worldwide, with Alzheimer's disease being the second leading cause of death in the United States. The urgent need for noninvasive biomarkers highlights the importance of this research.

Timeliness: The text is relevant to the current state of the field, as the development of noninvasive biomarkers for neurodegenerative diseases is an active area of research.

Relevance: The study's focus on cfDNA methylation profiling as a scalable framework for neurodegeneration detection and monitoring is an innovative approach that has the potential to revolutionize the field.

Examination of the Text:

  • Whole-genome nanopore methylation atlas: The creation of a comprehensive methylation atlas of primary human neural cell types provides a solid foundation for developing classifiers that can accurately assign cfDNA to its neuronal or glial origin.
  • Training classifiers: The use of this atlas to train classifiers that can accurately identify the origin of cfDNA demonstrates the effectiveness of this approach.
  • Validation in silico and in plasma samples: The validation of classifiers in silico and in plasma samples from patients with neurodegenerative diseases and controls provides robust evidence for the predictive utility of this platform.
  • Predictive modeling: The achievement of high accuracy (AUCs u003e0.98) in predicting disease diagnosis and progression suggests that this platform has significant potential for clinical application.

Usefulness for Disease Management and Drug Discovery: The text provides valuable insights into the development of noninvasive biomarkers for neurodegenerative diseases. The scalability of this platform makes it a promising tool for early detection and monitoring, potentially leading to improved patient outcomes. Furthermore, this research may aid in identifying potential therapeutic targets for these diseases.

Originality of the Text: While the concept of using cfDNA methylation patterns as a noninvasive biomarker is not entirely new, the development of a scalable framework for neurodegeneration detection and monitoring using classifiers trained on a comprehensive methylation atlas represents a significant advancement in the field.

Comparison to State-of-the-Art: This research surpasses current methods for noninvasive biomarker detection, which often rely on single biomarkers or limited sample sizes. The scalability of this platform makes it a more practical and effective tool for clinical application.

In conclusion, the text presents a significant advancement in the field of neurodegenerative disease research, offering a promising noninvasive biomarker platform for detection, monitoring, and intervention.

Read the original article on medRxiv


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